> For the complete documentation index, see [llms.txt](https://docs.mithrl.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://docs.mithrl.com/docs/data-sources.md).

# Data Sources

The following are data sources as of Sept 2026

<table><thead><tr><th width="65.58203125" data-type="number">#</th><th width="615.2890625">Source</th><th>Version</th></tr></thead><tbody><tr><td>1</td><td>Cell Marker</td><td>2026-06-22</td></tr><tr><td>2</td><td>Cellosaurus</td><td>56</td></tr><tr><td>3</td><td>ChEBI</td><td>rel251</td></tr><tr><td>4</td><td>ChEMBL</td><td>chembl_37</td></tr><tr><td>5</td><td>Cell Ontology (CL)</td><td>2026-06</td></tr><tr><td>6</td><td><a href="http://clinicaltrials.gov/">ClinicalTrials.gov</a></td><td>2026-07-07</td></tr><tr><td>7</td><td>ClinPGx</td><td>2026-07-05</td></tr><tr><td>8</td><td>Collection of Transcriptional Regulatory Interactions (CollecTRI)</td><td>2023</td></tr><tr><td>9</td><td>Complex Portal</td><td>2026-01</td></tr><tr><td>10</td><td>Comparative Toxicology Database (CTD)</td><td>2026-06</td></tr><tr><td>11</td><td>DepMap</td><td>19Q3</td></tr><tr><td>12</td><td>DepMap CRISPR</td><td>26Q1</td></tr><tr><td>13</td><td>DoRothEA</td><td>20230728-20250813</td></tr><tr><td>14</td><td>Experimental Factor Ontology (EFO)</td><td>v3.92.0</td></tr><tr><td>15</td><td>Ensembl</td><td>113</td></tr><tr><td>16</td><td>Gene Ontology (GO)</td><td>2026-03</td></tr><tr><td>17</td><td>Human Metabolome Database (HMDB)</td><td>5</td></tr><tr><td>18</td><td>Human Protein Atlas (HPA)</td><td>25.1</td></tr><tr><td>19</td><td>Human Phenotype Ontology (HPO)</td><td>2026-02</td></tr><tr><td>20</td><td>IntAct</td><td>2026-01</td></tr><tr><td>21</td><td>Kyoto Encyclopedia of Genes and Genomes (KEGG)</td><td>2026-07</td></tr><tr><td>22</td><td>LiverTox</td><td>2026-07-07</td></tr><tr><td>23</td><td>MedDRA</td><td>29</td></tr><tr><td>24</td><td>MED-RT (Medication Reference Terminology)</td><td>2026.07.06</td></tr><tr><td>25</td><td>miRBase</td><td>22.1</td></tr><tr><td>26</td><td>Monarch Disease Ontology (MONDO)</td><td>2026-05</td></tr><tr><td>27</td><td>NCBI Orthologs</td><td>2026-07</td></tr><tr><td>28</td><td>OpenTargets</td><td>25.12</td></tr><tr><td>29</td><td>Perturb-seq dataset from Replogle et al., 2022 (PMC9380471)</td><td>scperturb-zenodo-13350497</td></tr><tr><td>30</td><td>PubChem</td><td>2026-07-21</td></tr><tr><td>31</td><td>Reactome</td><td>v96</td></tr><tr><td>32</td><td>RxNorm</td><td>September 8, 2026</td></tr><tr><td>33</td><td>SIGNOR</td><td>2026-06</td></tr><tr><td>34</td><td>The Small Molecule Pathway Database</td><td>v2.0</td></tr><tr><td>35</td><td>Search Tool for the Retrieval of Interacting Genes/Proteins (STRING)</td><td>12</td></tr><tr><td>36</td><td>Uberon</td><td>2026-06</td></tr><tr><td>37</td><td>UniProt</td><td>2025_02</td></tr></tbody></table>