For the complete documentation index, see llms.txt. This page is also available as Markdown.

Inference Algorithms

Curated statistical analyses available through the inference API. Each connects a molecular signature you provide to a different kind of curated biological knowledge, tests it against a background your experiment could actually observe, and returns a ranked, evidence-linked result. This list grows over time — see the pages below for what's available today.

To submit and monitor a run, see Running and managing Inference.

Inference
Answers

Which curated pathways are over-represented in my selected genes?

Which upstream regulators have an unexpectedly large number of known targets in my signature?

Which curated toxicity endpoints are over-represented in my signature?

When submitting a run, use the full preset ids: canonical-pathway-analysis, upstream-regulator-analysis, and toxicity-endpoint-analysis. The abbreviations above are shorthand for these pages only.

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